3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13895

Details:

PFam ID : PF13895

PFam Domain Description : Immunoglobulin domain

Number of Sequence in 50% Dataset : 2513

Number of Sequence in Full Dataset : 6425

Average sequence length: 89.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13895	B3KW09_HUMAN_2_65	97.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13895	Q4RGD6_TETNG_165_237	96.8

Sequence based PCA Plot of the family - PF13895 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=22 Length=23
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay