3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13894

Details:

PFam ID : PF13894

PFam Domain Description : C2H2-type zinc finger

Number of Sequence in 50% Dataset : 2189

Number of Sequence in Full Dataset : 7372

Average sequence length: 24.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13894	D7T6I2_VITVI_89_158	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13894	B6JUW8_SCHJY_108_130	23

Sequence based PCA Plot of the family - PF13894 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay