3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13892

Details:

PFam ID : PF13892

PFam Domain Description : DNA-binding domain

Number of Sequence in 50% Dataset : 23

Number of Sequence in Full Dataset : 116

Average sequence length: 110.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13892	D7T6I2_VITVI_89_158	86.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13892	A2XGQ3_ORYSI_338_458	100

Sequence based PCA Plot of the family - PF13892 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=38 Length=8
Motif3 Start=18 Length=8
Motif4 Start=108 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay