3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13889

Details:

PFam ID : PF13889

PFam Domain Description : Chromosome segregation during meiosis

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 70

Average sequence length: 65.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13889	A2Z2Z2_ORYSI_4_62	18.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13889	E1FGR2_LOALO_548_613	100

Sequence based PCA Plot of the family - PF13889 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=4 Length=30
Motif2 Start=85 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay