3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13888

Details:

PFam ID : PF13888

PFam Domain Description : Myelin gene regulatory factor C-terminal domain 2

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 27

Average sequence length: 130.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13888	B7ZL36_HUMAN_152_249	84.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13888	MRF_XENLA_946_1091	100

Sequence based PCA Plot of the family - PF13888 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=123 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay