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3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13887
Details:

PFam ID : PF13887

PFam Domain Description : Myelin gene regulatory factor -C-terminal domain 1

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 22

Average sequence length: 34.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF13887D8LV65_BLAHO_35_232No suitable BRS could be identified
HMMER Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF13887F1NFV5_CHICK_291_342100
Sequence based PCA Plot of the family - PF13887 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:
Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay