3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13886

Details:

PFam ID : PF13886

PFam Domain Description : Domain of unknown function (DUF4203)

Number of Sequence in 50% Dataset : 72

Number of Sequence in Full Dataset : 133

Average sequence length: 180.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13886	D8LV65_BLAHO_35_232	53.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13886	E9CHC2_9EUKA_52_262	94.6

Sequence based PCA Plot of the family - PF13886 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=24 Length=8
Motif2 Start=1 Length=8
Motif3 Start=150 Length=8
Motif4 Start=15 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay