3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13884

Details:

PFam ID : PF13884

PFam Domain Description : Chaperone of endosialidase

Number of Sequence in 50% Dataset : 136

Number of Sequence in Full Dataset : 398

Average sequence length: 56.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13884	B0T646_CAUSK_803_847	85.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13884	F2TX38_9EUKA_546_617	100

Sequence based PCA Plot of the family - PF13884 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=8
Motif2 Start=1 Length=17
Motif3 Start=37 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay