3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13882

Details:

PFam ID : PF13882

PFam Domain Description : C-terminal domain of Fibronectin type III

Number of Sequence in 50% Dataset : 57

Number of Sequence in Full Dataset : 109

Average sequence length: 98.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13882	E4Y1H6_OIKDI_749_864	26.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13882	F1KVB3_ASCSU_719_811	100

Sequence based PCA Plot of the family - PF13882 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay