3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13880

Details:

PFam ID : PF13880

PFam Domain Description : ESCO1/2 acetyl-transferase

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 115

Average sequence length: 68.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13880	Q4P953_USTMA_1631_1706	45.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13880	Q4P953_USTMA_1631_1706	100

Sequence based PCA Plot of the family - PF13880 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=26 Length=8
Motif2 Start=17 Length=8
Motif3 Start=6 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay