3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13879

Details:

PFam ID : PF13879

PFam Domain Description : KIAA1430 homologue

Number of Sequence in 50% Dataset : 76

Number of Sequence in Full Dataset : 145

Average sequence length: 97.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13879	A8JHV8_CHLRE_1_53	25.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13879	B4QW29_DROSI_20_123	99.3

Sequence based PCA Plot of the family - PF13879 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=34 Length=8
Motif4 Start=73 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay