3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13878

Details:

PFam ID : PF13878

PFam Domain Description : zinc-finger of acetyl-transferase ESCO

Number of Sequence in 50% Dataset : 17

Number of Sequence in Full Dataset : 115

Average sequence length: 39.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13878	B0EIK4_ENTDI_29_69	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13878	C5E3G0_LACTC_18_58	100

Sequence based PCA Plot of the family - PF13878 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=9 Length=23

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay