3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13875

Details:

PFam ID : PF13875

PFam Domain Description : Domain of unknown function (DUF4202)

Number of Sequence in 50% Dataset : 15

Number of Sequence in Full Dataset : 86

Average sequence length: 180.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13875	A9GTM5_SORC5_119_304	57.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13875	E6ZNE4_9BASI_7_233	100

Sequence based PCA Plot of the family - PF13875 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=31 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=22 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay