3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13874

Details:

PFam ID : PF13874

PFam Domain Description : Nucleoporin complex subunit 54

Number of Sequence in 50% Dataset : 42

Number of Sequence in Full Dataset : 120

Average sequence length: 136.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13874	Q4UI28_THEAN_108_173	63.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13874	E3L526_PUCGT_249_412	100

Sequence based PCA Plot of the family - PF13874 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=28
Motif2 Start=31 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay