3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13873

Details:

PFam ID : PF13873

PFam Domain Description : Myb/SANT-like DNA-binding domain

Number of Sequence in 50% Dataset : 87

Number of Sequence in Full Dataset : 148

Average sequence length: 73.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13873	Q4S9F5_TETNG_127_182	95.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13873	B7PAD9_IXOSC_180_260	100

Sequence based PCA Plot of the family - PF13873 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=39 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay