3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13871

Details:

PFam ID : PF13871

PFam Domain Description : Helicase_C-like

Number of Sequence in 50% Dataset : 44

Number of Sequence in Full Dataset : 169

Average sequence length: 226.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13871	D7G328_ECTSI_151_245	51.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13871	D7G328_ECTSI_151_245	100

Sequence based PCA Plot of the family - PF13871 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=15 Length=17
Motif2 Start=1 Length=11
Motif3 Start=246 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay