3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13870

Details:

PFam ID : PF13870

PFam Domain Description : Domain of unknown function (DUF4201)

Number of Sequence in 50% Dataset : 70

Number of Sequence in Full Dataset : 133

Average sequence length: 163.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13870	C5KQ37_9ALVE_1_109	60.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13870	C5LWI0_9ALVE_121_225	100

Sequence based PCA Plot of the family - PF13870 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=2 Length=27
Motif2 Start=106 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay