3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13869

Details:

PFam ID : PF13869

PFam Domain Description : Nucleotide hydrolase

Number of Sequence in 50% Dataset : 22

Number of Sequence in Full Dataset : 106

Average sequence length: 164.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13869	F2HI71_9CRYP_8_191	76.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13869	Q57WN8_9TRYP_69_294	100

Sequence based PCA Plot of the family - PF13869 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=161 Length=8
Motif2 Start=121 Length=8
Motif3 Start=6 Length=8
Motif4 Start=112 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay