3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13863

Details:

PFam ID : PF13863

PFam Domain Description : Domain of unknown function (DUF4200)

Number of Sequence in 50% Dataset : 61

Number of Sequence in Full Dataset : 160

Average sequence length: 125.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13863	E4Y0Y5_OIKDI_111_236	21.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13863	D2CG23_TRICA_54_192	100

Sequence based PCA Plot of the family - PF13863 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=107 Length=8
Motif2 Start=1 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay