3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13862

Details:

PFam ID : PF13862

PFam Domain Description : p21-C-terminal region-binding protein

Number of Sequence in 50% Dataset : 67

Number of Sequence in Full Dataset : 177

Average sequence length: 193.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13862	C0Z2T7_ARATH_45_184	86.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13862	F0Z8U2_DICPU_152_408	100

Sequence based PCA Plot of the family - PF13862 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=189 Length=8
Motif2 Start=152 Length=20
Motif3 Start=218 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay