3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13861

Details:

PFam ID : PF13861

PFam Domain Description : Flagellar L-ring protein

Number of Sequence in 50% Dataset : 147

Number of Sequence in Full Dataset : 377

Average sequence length: 137.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13861	D1AVA6_STRM9_70_361	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13861	B2PY25_PROST_91_276	99.2

Sequence based PCA Plot of the family - PF13861 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=2 Length=30
Motif2 Start=117 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay