3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13857

Details:

PFam ID : PF13857

PFam Domain Description : Ankyrin repeats (many copies)

Number of Sequence in 50% Dataset : 254

Number of Sequence in Full Dataset : 2326

Average sequence length: 54.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13857	B0WXL1_CULQU_624_682	93.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13857	E1FKK8_LOALO_503_573	100

Sequence based PCA Plot of the family - PF13857 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=30 Length=20
Motif2 Start=1 Length=8
Motif3 Start=61 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay