3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13855

Details:

PFam ID : PF13855

PFam Domain Description : Leucine rich repeat

Number of Sequence in 50% Dataset : 2348

Number of Sequence in Full Dataset : 25567

Average sequence length: 59.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13855	Q8NH47_HUMAN_138_189	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13855	Q4RF21_TETNG_154_195	99.9

Sequence based PCA Plot of the family - PF13855 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=11
Motif2 Start=18 Length=26
Motif3 Start=56 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay