3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13854

Details:

PFam ID : PF13854

PFam Domain Description : Kelch motif

Number of Sequence in 50% Dataset : 218

Number of Sequence in Full Dataset : 651

Average sequence length: 42.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13854	Q8NH47_HUMAN_138_189	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13854	D0NG46_PHYIT_310_354	99.8

Sequence based PCA Plot of the family - PF13854 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=15 Length=8
Motif2 Start=30 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay