3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13853

Details:

PFam ID : PF13853

PFam Domain Description : Olfactory receptor

Number of Sequence in 50% Dataset : 88

Number of Sequence in Full Dataset : 5558

Average sequence length: 142.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13853	Q8NH47_HUMAN_138_189	91.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13853	Q9W6Y4_RANES_16_163	99.9

Sequence based PCA Plot of the family - PF13853 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=35 Length=8
Motif2 Start=123 Length=8
Motif3 Start=105 Length=8
Motif4 Start=73 Length=20

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay