3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13851

Details:

PFam ID : PF13851

PFam Domain Description : Growth-arrest specific micro-tubule binding

Number of Sequence in 50% Dataset : 36

Number of Sequence in Full Dataset : 80

Average sequence length: 187.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13851	C6KT85_PLAF7_207_401	74.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13851	B4NPW8_DROWI_220_421	100

Sequence based PCA Plot of the family - PF13851 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=81 Length=8
Motif4 Start=144 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay