3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13850

Details:

PFam ID : PF13850

PFam Domain Description : Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)

Number of Sequence in 50% Dataset : 98

Number of Sequence in Full Dataset : 330

Average sequence length: 101.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13850	B7GDI7_PHATC_76_196	95.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13850	B7GDI7_PHATC_76_196	100

Sequence based PCA Plot of the family - PF13850 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=31 Length=8
Motif2 Start=1 Length=18
Motif3 Start=22 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay