3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13849

Details:

PFam ID : PF13849

PFam Domain Description : Myotubularin Y_phosphatase-like

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 302

Average sequence length: 53.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13849	Q9D0W0_MOUSE_1_51	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13849	C4LZF7_ENTHI_576_623	93.6

Sequence based PCA Plot of the family - PF13849 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=9 Length=8
Motif2 Start=25 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay