3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13848

Details:

PFam ID : PF13848

PFam Domain Description : Thioredoxin-like domain

Number of Sequence in 50% Dataset : 236

Number of Sequence in Full Dataset : 634

Average sequence length: 175.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13848	B0MTM8_9BACT_431_627	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13848	A9S8A5_PHYPA_172_345	99.0

Sequence based PCA Plot of the family - PF13848 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay