3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13844

Details:

PFam ID : PF13844

PFam Domain Description : Glycosyl transferase family 41

Number of Sequence in 50% Dataset : 199

Number of Sequence in Full Dataset : 1032

Average sequence length: 180.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13844	E2B2Q8_9HYME_1_44	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13844	Q95RP9_DROME_1_318	54

Sequence based PCA Plot of the family - PF13844 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=113 Length=8
Motif3 Start=87 Length=11
Motif4 Start=164 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay