3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13843

Details:

PFam ID : PF13843

PFam Domain Description : Transposase IS4

Number of Sequence in 50% Dataset : 271

Number of Sequence in Full Dataset : 395

Average sequence length: 195.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13843	E2B2Q8_9HYME_1_44	70.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13843	B7G2Y4_PHATC_206_280	100

Sequence based PCA Plot of the family - PF13843 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay