3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13842

Details:

PFam ID : PF13842

PFam Domain Description : DDE_Tnp_1-like zinc-ribbon

Number of Sequence in 50% Dataset : 32

Number of Sequence in Full Dataset : 56

Average sequence length: 32.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13842	DB119_PANTR_29_56	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13842	C7ENG9_ACRMI_526_562	78

Sequence based PCA Plot of the family - PF13842 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay