3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13841

Details:

PFam ID : PF13841

PFam Domain Description : Beta defensin

Number of Sequence in 50% Dataset : 19

Number of Sequence in Full Dataset : 173

Average sequence length: 30.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13841	DB119_PANTR_29_56	33.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13841	Q30KU5_CANFA_27_56	98.2

Sequence based PCA Plot of the family - PF13841 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=5 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay