3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13840

Details:

PFam ID : PF13840

PFam Domain Description : Family description

Number of Sequence in 50% Dataset : 39

Number of Sequence in Full Dataset : 1359

Average sequence length: 65.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13840	D3UFU1_HELM1_48_105	63.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13840	C3RJ93_9FIRM_86_150	99.6

Sequence based PCA Plot of the family - PF13840 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=51 Length=14
Motif2 Start=39 Length=11
Motif3 Start=20 Length=8
Motif4 Start=9 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay