3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13839

Details:

PFam ID : PF13839

PFam Domain Description : GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Number of Sequence in 50% Dataset : 186

Number of Sequence in Full Dataset : 691

Average sequence length: 247.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13839	E1F2A4_GIAIA_374_441	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13839	D7FZD7_ECTSI_113_257	99.7

Sequence based PCA Plot of the family - PF13839 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=26 Length=8
Motif2 Start=1 Length=8
Motif3 Start=240 Length=8
Motif4 Start=17 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay