3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13837

Details:

PFam ID : PF13837

PFam Domain Description : Myb/SANT-like DNA-binding domain

Number of Sequence in 50% Dataset : 193

Number of Sequence in Full Dataset : 668

Average sequence length: 90.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13837	B4CXF5_9BACT_30_186	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13837	A9NXN9_PICSI_49_177	100

Sequence based PCA Plot of the family - PF13837 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=23 Length=8
Motif4 Start=42 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay