3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13834

Details:

PFam ID : PF13834

PFam Domain Description : Domain of unknown function (DUF4193)

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 129

Average sequence length: 96.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13834	E1VX75_ARTAR_1_98	25

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13834	E1VX75_ARTAR_1_98	100

Sequence based PCA Plot of the family - PF13834 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=17
Motif2 Start=46 Length=8
Motif3 Start=69 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay