3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13829

Details:

PFam ID : PF13829

PFam Domain Description : Domain of unknown function (DUF4191)

Number of Sequence in 50% Dataset : 22

Number of Sequence in Full Dataset : 122

Average sequence length: 226.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13829	D6KU02_SCAIO_34_273	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13829	D6KU02_SCAIO_34_273	100

Sequence based PCA Plot of the family - PF13829 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=176 Length=8
Motif2 Start=86 Length=8
Motif3 Start=133 Length=11
Motif4 Start=221 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay