3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13828

Details:

PFam ID : PF13828

PFam Domain Description : Domain of unknown function (DUF4190)

Number of Sequence in 50% Dataset : 57

Number of Sequence in Full Dataset : 243

Average sequence length: 63.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13828	A5UYT8_ROSS1_37_102	30.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13828	D4IYU5_BUTFI_13_98	100

Sequence based PCA Plot of the family - PF13828 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=17 Length=21
Motif3 Start=62 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay