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3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13827
Details:

PFam ID : PF13827

PFam Domain Description : Domain of unknown function (DUF4189)

Number of Sequence in 50% Dataset : 86

Number of Sequence in Full Dataset : 151

Average sequence length: 95.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF13827E2NSX2_9FIRM_69_13296.4
HMMER Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF13827D5RKR2_9PROT_1_115100
Sequence based PCA Plot of the family - PF13827 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=50 Length=8
Motif4 Start=1 Length=8
Download PSSM/HMM Models/Alignment:
Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay