3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13826

Details:

PFam ID : PF13826

PFam Domain Description : Domain of unknown function (DUF4188)

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 88

Average sequence length: 114.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13826	E5A1F5_LEPMC_100_231	52.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13826	E5A1F5_LEPMC_100_231	100

Sequence based PCA Plot of the family - PF13826 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=11 Length=8
Motif2 Start=57 Length=8
Motif3 Start=42 Length=8
Motif4 Start=2 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay