3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13824

Details:

PFam ID : PF13824

PFam Domain Description : Zinc-finger of mitochondrial splicing suppressor 51

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 59

Average sequence length: 61.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13824	E3J3R4_FRASU_18_90	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13824	Q9VUL2_DROME_222_276	100

Sequence based PCA Plot of the family - PF13824 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=40 Length=11
Motif2 Start=31 Length=8
Motif3 Start=13 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay