3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13823

Details:

PFam ID : PF13823

PFam Domain Description : Alcohol dehydrogenase GroES-associated

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 393

Average sequence length: 22.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13823	E3J3R4_FRASU_18_90	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13823	C0C5T8_9CLOT_1_23	97.7

Sequence based PCA Plot of the family - PF13823 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=15 Length=8
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay