3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13817

Details:

PFam ID : PF13817

PFam Domain Description : IS66 C-terminal element

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 483

Average sequence length: 38.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13817	A9DHU9_9GAMM_298_320	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13817	A3ZP54_9PLAN_498_540	99.1

Sequence based PCA Plot of the family - PF13817 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=3 Length=20
Motif2 Start=32 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay