3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13816

Details:

PFam ID : PF13816

PFam Domain Description : Haem-containing dehydratase

Number of Sequence in 50% Dataset : 21

Number of Sequence in Full Dataset : 57

Average sequence length: 286.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13816	E2XQ72_PSEFL_43_171	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13816	E9F723_METAR_36_344	100

Sequence based PCA Plot of the family - PF13816 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=13 Length=8
Motif2 Start=4 Length=8
Motif3 Start=86 Length=11
Motif4 Start=134 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay