3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13815

Details:

PFam ID : PF13815

PFam Domain Description : Iguana/Dzip1-like DAZ-interacting protein N-terminal

Number of Sequence in 50% Dataset : 53

Number of Sequence in Full Dataset : 86

Average sequence length: 110.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13815	C9JD19_HUMAN_24_67	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13815	F0WJI6_9STRA_13_139	97.6

Sequence based PCA Plot of the family - PF13815 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=64 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay