3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13811

Details:

PFam ID : PF13811

PFam Domain Description : Domain of unknown function (DUF4186)

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 81

Average sequence length: 105.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13811	C4ZH99_EUBR3_2_61	14.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13811	E0TFI7_PARBH_60_174	100

Sequence based PCA Plot of the family - PF13811 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=41 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay