3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13810

Details:

PFam ID : PF13810

PFam Domain Description : Domain of unknown function (DUF4185)

Number of Sequence in 50% Dataset : 62

Number of Sequence in Full Dataset : 128

Average sequence length: 281.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13810	C7PM48_CHIPD_236_522	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13810	A1U9X9_MYCSK_308_696	100

Sequence based PCA Plot of the family - PF13810 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=379 Length=11
Motif2 Start=17 Length=8
Motif3 Start=43 Length=8
Motif4 Start=351 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay