3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13809

Details:

PFam ID : PF13809

PFam Domain Description : Tubulin like

Number of Sequence in 50% Dataset : 47

Number of Sequence in Full Dataset : 82

Average sequence length: 317.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13809	A3ZUQ8_9PLAN_342_564	93.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13809	B3QN46_CHLP8_22_399	100

Sequence based PCA Plot of the family - PF13809 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=268 Length=8
Motif2 Start=233 Length=8
Motif3 Start=184 Length=11
Motif4 Start=2 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay