3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13808

Details:

PFam ID : PF13808

PFam Domain Description : DDE_Tnp_1-associated

Number of Sequence in 50% Dataset : 92

Number of Sequence in Full Dataset : 263

Average sequence length: 82.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13808	Q1J540_STRPF_10_61	79.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13808	D2BC55_STRRD_30_127	100

Sequence based PCA Plot of the family - PF13808 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=68 Length=8
Motif2 Start=6 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay